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Genomics

43 projects

Showing 7 of 43 projects

dgidb
dgidbRuby

A Ruby on Rails web application for querying and exploring drug-gene interaction data from The Genome Institute's database.

#biomedical-research#api#genomics
Stars97
Forks32
Last commit1 year ago
Awesome-alternative-splicing
Awesome-alternative-splicing

A curated collection of software tools and databases for analyzing alternative splicing in genomics research.

#transcriptomics#bioconductor#research-tools
Stars61
Forks9
Last commit8 years ago
dna-claude-analysis
dna-claude-analysisPython

Analyze your genetic data through natural language conversation with Claude, exploring health, ancestry, nutrition, and more from raw DNA files.

#ancestry-analysis#claudecode#personalized-health
Stars58
Forks9
Last commit
RS-FISH
RS-FISHJava

An open-source tool for precise, interactive, fast, and scalable spot detection in 2D/3D microscopy images for FISH-based spatial genomics.

#bioimage-analysis#genomics#fish-spot-detection
Stars55
Forks15
Last commit1 year ago
BABEL
BABELJupyter Notebook

A deep learning model that translates between single-cell multi-omic profiles, such as scATAC-seq and scRNA-seq, using a shared latent representation.

#scrna-seq#cross-modality-translation#deep-learning
Stars53
Forks18
Last commit3 years ago
ChatSpatial
ChatSpatialPython

An MCP server that enables natural language conversation for analyzing spatial transcriptomics data through 60+ curated methods.

#single-cell-analysis#workflow-automation#reproducible-research
Stars45
Forks14
Last commit
FlashDeconv
FlashDeconvPython

A fast spatial deconvolution tool for transcriptomics data that scales to million-spot datasets while preserving rare cell type signals.

#python-library#single-cell-analysis#cell-type-deconvolution
Stars25
Forks0
Last commit
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#Bioinformatics41
#Computational Biology14
#Data Analysis11
#Python8
#Deep Learning8
#Single Cell Analysis7
#Transcriptomics7
#Dna Sequencing6
#Rna Seq6
#Bioconductor5
#Dna5
#Huggingface5