Transcriptomics
Showing 11 of 11 projects
A fast RNA-seq aligner for mapping spliced transcript sequences to a reference genome.
An educational tutorial and working demonstration pipeline for RNA-seq analysis on cloud platforms.
A comprehensive collection of notes, tutorials, and resources for RNA-seq data analysis, covering alignment, quantification, differential expression, and more.
A collection of transformer-based foundation models for genomics and transcriptomics, enabling tasks like sequence analysis, functional prediction, and conversational DNA exploration.
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell transcriptomics data.
A scalable Python toolkit for RNA velocity analysis in single cells using dynamical modeling.
A factor analysis framework for unsupervised integration of multi-omics datasets.
A curated list of web-based interactive visualization tools for exploring biological data across genomics, transcriptomics, and other omics fields.
A large-scale foundation model pretrained on over 500,000 human bulk RNA-seq profiles for biomedical transcriptome analysis.
A multitask generative pre-trained language model for zero-shot cell type annotation, batch integration, and conditional cell generation in single-cell transcriptomics.
A curated collection of software tools and databases for analyzing alternative splicing in genomics research.
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