Dna Sequencing

HyenaDNAAssembly

A long-range genomic foundation model that processes DNA sequences up to 1 million nucleotides at single nucleotide resolution.

DNABERTPython

A pre-trained BERT model designed for DNA sequence analysis, enabling genome understanding tasks like classification and motif discovery.

DNABERT-2Shell

A foundation model for multi-species genome understanding, achieving state-of-the-art performance on 28 genomic tasks.

BasenjiPython

A deep learning toolkit for predicting regulatory activity, 3D genome folding, and mRNA half-life from DNA/RNA sequences.

GPN (Genomic Pre-trained Network)Jupyter Notebook

A collection of genomic language models for predicting variant effects and evolutionary constraints from DNA sequences.