Research Tools
Showing 36 of 148 projects
A high-performance, user-friendly OCaml library for bioinformatics applications.
Converts R regression model outputs into publication-ready LaTeX or HTML tables for easy model comparison.
An open-source JavaScript/TypeScript library and framework for interactive visualization of multivariate dynamic networks.
A curated list of software, datasets, and publications for image-based profiling of biological phenotypes in drug discovery and cell biology.
A curated list of software, datasets, and publications for image-based profiling of biological phenotypes in drug discovery and cell biology.
A curated collection of resources for applying machine learning to biomedical and healthcare imaging applications.
An open-source Python library providing mathematical tire models for vehicle dynamics research and simulation.
A curated collection of open-access databases, museums, citizen science projects, and resources for studying parasites and host-pathogen interactions.
A minimalist macOS app for recording short tasks with research participants using ffmpeg.
A curated collection of software tools and databases for analyzing alternative splicing in genomics research.
A TensorFlow implementation of convolutional highway networks for deep learning experiments.
An OCaml library for building and executing typed, distributed scientific workflows with automatic dependency tracking.
A proof-of-concept for decentralized machine learning using federated learning on the Golem network to distribute training across multiple nodes.
A curated list of software, tools, and resources for exploring, organizing, and analyzing neuroimaging data with a focus on MRI.
A Model Context Protocol server that provides AI assistants with structured scientific paper data including methods, results, and quality scores.
A framework for keeping biomedical text mining tools running on the latest publications from PubMed.
A curated collection of online resources for neuroimaging methods including MRI, fMRI, EEG, and MEG.
A comprehensive Go library implementing various entropy measures for discrete and continuous state spaces.
A lightweight logging library for machine learning research experiments.
A unified Coq library for bit vectors used across multiple MIT research projects.
A Python framework for distributed processing and automation of neuroimaging data on XNAT platforms.
A curated collection of neuroscience, data science, and open science resources, tools, and AI productivity aids for researchers.
A customizable Scala crawler for creating personal web archives in WARC/CDX format.
Example notebooks for analyzing web archives using the Archives Unleashed Toolkit.
A Python library for state-based transformation systems in brain modeling and simulation.
Workshop materials for teaching R programming to social scientists, covering data analysis and visualization fundamentals.
Quarto is an open-source scientific and technical publishing system for creating documents with R, Python, Julia, and Observable.
A job server for distributed compute analysis of web archive (WARC) collections.
A curated list of open-source tools for systematic reviews, meta-analysis, and evidence synthesis workflows.
Scripts to generate a dataset with static frames from the Arcade Learning Environment for Atari games.
Python library for analyzing temporal networks and detecting dynamic communities.
A desktop application for retrieving, normalizing, and exploring document collections from scientific, institutional, and web sources without coding.
Alfred workflow for DOI queries and actions including BibTeX citation lookup, link copying, resolution, and short DOI generation.
A Python tool that concatenates LaTeX documents while properly merging preambles and handling dependencies.
A virtual machine and walkthrough for setting up and using the Heritrix web crawler for web archiving.
An R package providing easy access to 1,075+ complex network datasets from the Colorado Index of Complex Networks (ICON).
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