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Research Tools

148 projects

Showing 36 of 148 projects

cclib
cclibPython

A Python library for parsing computational chemistry logfiles and implementing platform-independent algorithms.

#chemistry-algorithms#hacktoberfest#scientific-computing
Stars431
Forks192
Last commit1 day ago
Marvin - A Minimalist GPU-only N-Dimensional ConvNets Framework
Marvin - A Minimalist GPU-only N-Dimensional ConvNets FrameworkC++

A minimalist GPU-only framework for N-dimensional convolutional neural networks focused on speed and hackability.

#cuda#deep-learning#research-tools
Stars429
Forks137
Last commit
cdlib
cdlibPython

A Python meta-library for community detection in complex networks, implementing algorithms, fitness functions, and visualization.

#networkx#igraph#python-library
Stars429
Forks77
Last commit2 months ago
Stage
StageC++

A 2.5D robotics simulator for multi-agent systems, usable as a standalone program or C++ library.

#robotics#robot-control#c-plus-plus-library
Stars425
Forks191
Last commit5 years ago
Digital Humanities
Digital HumanitiesSCSS

A curated list of tools, resources, and services for humanities scholars using quantitative or computational methods.

#open-source#academic-software#dh-tools
Stars423
Forks61
Last commit2 days ago
HDR_Toolbox
HDR_ToolboxMATLAB

A MATLAB/Octave toolbox for processing High Dynamic Range (HDR) images, including tone mapping and expansion operators.

#scientific-computing#inverse-tonemapping#bilateral-filtering
Stars417
Forks148
Last commit1 month ago
AGI & CoCoSci
AGI & CoCoSciTeX

A curated collection of resources for Artificial General Intelligence and Computational Cognitive Sciences, covering papers, tools, and researchers.

#pragmatics#paper-curation#developmental-psychology
Stars397
Forks29
Last commit
Neurite
NeuritePython

A neural networks toolbox for medical image analysis, providing specialized layers, models, and utilities for TensorFlow/Keras.

#brain#medical-image-computing#deep-learning
Stars376
Forks77
Last commit23 days ago
Neural Machine Translation Implementations
Neural Machine Translation Implementations

A curated list of open-source neural machine translation implementations across various deep learning frameworks.

#sequence-to-sequence#transformer-models#framework-comparison
Stars364
Forks65
Last commit4 years ago
Digital History
Digital HistoryJavaScript

A curated list of archives, primary sources, and learning resources for conducting historical research with digital tools.

#archival-resources#historical-research#dh
Stars360
Forks42
Last commit2 days ago
Awesome Digital History
Awesome Digital HistoryJavaScript

A curated list of archives, primary sources, and learning resources for conducting historical research with digital tools.

#archival-resources#historical-research#dh
Stars360
Forks42
Last commit2 days ago
Rfacebook
RfacebookR

An R package for accessing Facebook's Graph API to retrieve and analyze social media data programmatically.

#social-media-analysis#quantitative-analysis#r-package
Stars351
Forks240
Last commit6 years ago
dp
dpLua

A deep learning library for streamlining research and development using Torch7 with object-oriented design patterns.

#scientific-computing#deep-learning#neural-networks
Stars339
Forks140
Last commit10 years ago
ELI5
ELI5Python

Scripts and tools to recreate the ELI5 dataset for long-form question answering research.

#dataset-creation#transformer-models#research-tools
Stars326
Forks42
Last commit5 years ago
Complexity Explained
Complexity Explained

A curated list of resources for studying complex systems science, covering concepts, models, software, and communities.

#emergence#research-tools#interdisciplinary-science
Stars302
Forks24
Last commit1 year ago
Complex Systems
Complex Systems

A curated list of resources for studying complex systems science, covering concepts, models, software, and literature.

#simulation#emergence#research-tools
Stars302
Forks24
Last commit1 year ago
Indonesian NLP
Indonesian NLP

A curated collection of datasets, corpora, and resources for Indonesian natural language processing tasks.

#nlp-resources#indonesian-language#text-classification
Stars289
Forks46
Last commit4 years ago
FedJAX
FedJAXPython

A JAX-based library for federated learning simulations that emphasizes ease-of-use in research.

#federated-learning#simulation#jax
Stars272
Forks41
Last commit13 days ago
Awesome medical imaging
Awesome medical imaging

A curated list of open-source software tools for medical imaging research, including segmentation, visualization, and deep learning libraries.

#nifti#deep-learning#neural-networks
Stars250
Forks45
Last commit7 months ago
Omero
OmeroJava

Open-source software and data format standards for storing and manipulating biological light microscopy data.

#image-analysis#database#data-standards
Stars222
Forks105
Last commit13 days ago
olcli
olcliTypeScript

A command-line interface to sync, manage, and compile LaTeX projects from your terminal using Overleaf's remote compiler.

#academic-writing#latex-tools#version-control
Stars215
Forks29
Last commit4 days ago
Drishti
DrishtiC++

An open-source scientific visualization tool for exploring and presenting volumetric datasets like tomography and electron-microscopy data.

#scientific-visualization#3d-visualization#open-source
Stars205
Forks43
Last commit21 days ago
Dataset
DatasetPython

A Python library for building lazy data processing and machine learning workflows that handle datasets larger than memory.

#pipeline-framework#batch-processing#workflow
Stars205
Forks45
Last commit3 months ago
fluster
flusterJavaScript

Free and open-source academic note-taking application with Rust-powered interactive plotting and dynamic RAG for researchers.

#open-source#productivity#academic
Stars203
Forks9
Last commit6 months ago
Evil-DICOM
Evil-DICOMC#

A simple C# library for reading, writing, and manipulating DICOM files in medical imaging applications.

#healthcare-software#nuget-package#research-tools
Stars192
Forks96
Last commit2 years ago
dpnn
dpnnLua

A Torch7 package providing extended neural network modules, criterions, and utilities for deep learning research.

#deep-learning#neural-networks#research-tools
Stars192
Forks84
Last commit9 years ago
papis.nvim
papis.nvimLua

A Neovim plugin for managing your bibliography, providing search, citation insertion, and note formatting directly within the editor.

#academic-writing#academia#citation-tool
Stars190
Forks17
Last commit11 months ago
OpenMicroscopy
OpenMicroscopyPython

A curated directory of open-source projects, tools, and resources for microscopy research and development.

#hardware-design#microscopy#educational-resources
Stars188
Forks36
Last commit2 months ago
webchem
webchemR

An R package to programmatically retrieve chemical information from various web databases and APIs.

#scientific-computing#cheminformatics#r-package
Stars186
Forks44
Last commit3 days ago
FirstData
FirstDataPython

A comprehensive, structured knowledge base of authoritative open data sources designed for AI agents to access and verify primary evidence.

#ai#evidence-chain#data-sources
Stars184
Forks33
Last commit16 days ago
SCICO
SCICOPython

A Python package built on JAX for solving inverse problems in scientific imaging using optimization and prior models.

#plug-and-play-priors#jax#python-library
Stars175
Forks24
Last commit10 days ago
Computational Biology
Computational BiologyPython

A curated collection of databases, software, and papers for computational biology research.

#single-cell-analysis#biological-databases#research-tools
Stars160
Forks20
Last commit
Archives Unleashed Toolkit
Archives Unleashed ToolkitScala

An open-source toolkit for analyzing web archives at scale using Apache Spark.

#apache-spark#web-archives#cultural-heritage
Stars158
Forks33
Last commit1 month ago
networkdata
networkdataR

An R package providing 2,260 network datasets in igraph format from diverse sources like social networks, animal interactions, and movie co-stars.

#igraph#r-package#data-science
Stars146
Forks16
Last commit6 months ago
Jupyter Notebooks for Digital Humanities
Jupyter Notebooks for Digital Humanities

A curated collection of Jupyter notebooks for digital humanities research and teaching, covering text analysis, data visualization, and more.

#text-analysis#educational-resources#multilingual
Stars142
Forks20
Last commit3 years ago
Auto-QChem
Auto-QChemPython

An automated workflow for generating and storing DFT calculations for organic molecules.

#cheminformatics#workflow-automation#research-tools
Stars133
Forks23
Last commit9 months ago
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