Pubrunner

MITPython

A framework for keeping biomedical text mining tools running on the latest publications from PubMed.

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Overview

A framework for keeping biomedical text mining result up-to-date

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PubTator Central

paper - A web platform that identifies five different types of biomedical concepts in PubMed articles and PubMed Central full texts. The full annotation sets are downloadable (see Annotated Text Data below)

paper - A natural language processing toolkit intended for use with the text in clinical reports. Check out their live demo first to see what it does. Usable at no cost for academic research