Open-Awesome
CategoriesAlternativesStacksSelf-HostedExplore
Open-Awesome

© 2026 Open-Awesome. Curated for the developer elite.

TermsPrivacyAboutGitHubRSS
  1. Home
  2. Categories
  3. Health and Social Science
  4. Biomedical Information Extraction

Biomedical Information Extraction

The "Awesome Biomedical Information Extraction" project is a curated collection of resources focused on extracting valuable information from unstructured biomedical data and text. This list encompasses a variety of tools, libraries, methodologies, and datasets specifically designed for biomedical text mining, natural language processing, and information retrieval. It caters to researchers, data scientists, and developers interested in the intersection of healthcare and data analysis, providing insights and techniques to enhance their work. Users can explore innovative approaches and tools that facilitate the extraction of meaningful information from complex biomedical literature and datasets, empowering advancements in research and healthcare applications.

biomedical-text-miningnatural-language-processingdata-extractionhealthcare-datainformation-retrievalmachine-learningtext-analysis
RSSView on GitHub
425 stars35 forks0 contributorsUpdated
Community-curated · Updated weekly · 100% open source

Found a gem we're missing?

Open-Awesome is built by the community, for the community. Submit a project, suggest an awesome list, or help improve the catalog on GitHub.

Submit a projectStar on GitHub

Table of Contents

20 sections · 107 projects

LLMs in Biomedical IE

4 projects
Large language models in healthcare: A comprehensive benchmark

dx.doi.org
Assessing the research landscape and clinical utility of large language models: a scoping review

doi.org
Ethical and regulatory challenges of large language models in medicine

doi.org
On the Dangers of Stochastic Parrots: Can Language Models Be Too Big?

dx.doi.org

Overviews

6 projects
Biomedical Informatics on the Cloud: A Treasure Hunt for Advancing Cardiovascular Medicine

ahajournals.org
Clinical information extraction applications: A literature review

sciencedirect.com
Literature Based Discovery: Models, methods, and trends

sciencedirect.com
Undiscovered Public Knowledge

jstor.org
Mining Electronic Health Records (EHRs): A Survey

arxiv.org
Capturing the Patient's Perspective: a Review of Advances in Natural Language Processing of Health-Related Text

ncbi.nlm.nih.gov

Groups Active in the Field

14 projects
Boston Children's Hospital Natural Language Processing Laboratory

childrenshospital.org
Brown Center for Biomedical Informatics

brown.edu
Center for Computational Pharmacology NLP Group

compbio.ucdenver.edu
Demner-Fushman group at NLM

lhncbc.nlm.nih.gov
BioNLP group at NCBI

ncbi.nlm.nih.gov
JensenLab

jensenlab.org
National Centre for Text Mining (NaCTeM)

nactem.ac.uk
Mayo Clinic's clinical natural language processing program

mayo.edu
Monarch Initiative

monarchinitiative.org
TurkuNLP

turkunlp.org
UTHealth Houston Biomedical Natural Language Processing Lab

sbmi.uth.edu
VCU Natural Language Processing Lab

nlp.cs.vcu.edu
Zaklab

zaklab.org
Columbia University Department of Biomedical Informatics

dbmi.columbia.edu

Organizations

2 projects
AMIA

amia.org
IMIA

imia-medinfo.org

Journals

5 projects
Database

academic.oup.com
NAR

academic.oup.com
JAMIA

academic.oup.com
JBI

sciencedirect.com
Scientific Data

nature.com

Related Awesome Lists

📦
Healthcare

The "Awesome Healthcare" project is a curated collection of open source software solutions designed to enhance the healthcare industry. This list encompasses a variety of resources, including electronic health record systems, telemedicine platforms, health data analytics tools, and applications for patient management. It serves as a valuable asset for healthcare providers, developers, policy experts, and researchers looking to improve healthcare delivery and innovation. By providing access to a wide range of tools and technologies, this project empowers users to contribute to and benefit from advancements in healthcare software. Explore this collection to discover solutions that can transform healthcare practices and improve patient outcomes.

3.7k
📦
Mental Health

The "Awesome Mental Health" project is a curated collection of resources aimed at promoting mental well-being within the software industry. This list encompasses a variety of categories including articles, self-care tips, support groups, mental health apps, and community initiatives that address the unique challenges faced by tech professionals. It is designed to benefit everyone from beginners to seasoned developers, offering insights and tools to foster a healthier work-life balance and reduce stress. By providing access to valuable information and support, this project encourages individuals to prioritize their mental health and find effective coping strategies in their professional lives.

3.5k
📦
Humane Technology

The "Awesome Humane Technology" project is a curated collection of open-source initiatives aimed at improving societal well-being through technology. This list encompasses a variety of projects, including tools for digital well-being, privacy protection, ethical design practices, and community-driven platforms that promote positive social impact. It serves as a valuable resource for developers, activists, and anyone interested in leveraging technology for good, providing insights into how to create more humane and responsible digital experiences. Users can explore innovative solutions that prioritize human values and contribute to a healthier digital landscape.

3.1k
📦
Neuroscience

The "Awesome Neuroscience" project is a curated collection of resources focused on the study of neuroscience, which explores the structure and function of the nervous system and brain. This list encompasses a variety of categories, including foundational textbooks, research papers, online courses, tools for data analysis, and community forums. It serves as a valuable resource for students, researchers, and professionals in the field, providing insights and knowledge essential for understanding complex neural processes. Whether you are just starting your journey in neuroscience or looking to deepen your expertise, this collection offers a wealth of information to support your learning and research endeavors.

1.6k