Neuroimaging
Showing 32 of 32 projects
A free, open-source multi-platform software for 3D visualization and medical image analysis.
A curated list of awesome neuroscience libraries, software, and resources for researchers and developers.
Machine learning for NeuroImaging in Python
A WebGL-based viewer for visualizing volumetric data, 3D meshes, and skeletons in arbitrary cross-sectional views.
Converts neuroimaging data from the DICOM format to the NIfTI format and generates BIDS JSON sidecars.
A MATLAB toolbox for advanced analysis of MEG, EEG, and iEEG data, developed at the Donders Institute.
Python package to access a cacophony of neuro-imaging file formats
A pure JavaScript medical research image viewer for DICOM and NIFTI formats with advanced visualization tools.
A JavaScript library for web-based 2D and 3D visualization of neurological data, featuring surface and volume viewers.
A curated list of open-source software tools for medical imaging research, including segmentation, visualization, and deep learning libraries.
Automated 3D cell detection and classification in large-scale volumetric brain images using deep learning.
An R package for performing graph theory analyses of brain MRI data from structural, DTI, and resting-state fMRI connectivity.
A Python library for serverless, random-access reading and writing of Neuroglancer Precomputed format volumes, meshes, and skeletons.
Automated 3D brain image registration tool for aligning sample data with anatomical atlases across multiple species.
A platform-independent lightweight Python library for designing and conducting timing-critical behavioral and neuroimaging experiments.
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
Easy and comprehensive assessment of predictive power, with support for neuroimaging features
An all-in-one MATLAB software suite for state-of-the-art processing and quantitative analysis of in-vivo magnetic resonance spectroscopy (MRS) data.
A web app, CLI tool, and library for validating Brain Imaging Data Structure (BIDS) compliance.
A 3D convolutional network software package for extracting axonal and filamentous structures from cleared brain imaging data.
A MATLAB-based 3D medical image viewer with multi-label segmentation, ROI tools, and support for DICOM/NIFTI formats.
A curated list of software, tools, and resources for exploring, organizing, and analyzing neuroimaging data with a focus on MRI.
A curated collection of online resources for neuroimaging methods including MRI, fMRI, EEG, and MEG.
A collection of IPython notebooks demonstrating EEG and MEG data processing workflows using mne-python.
A Python framework for distributed processing and automation of neuroimaging data on XNAT platforms.
A curated collection of neuroscience, data science, and open science resources, tools, and AI productivity aids for researchers.
A collection of pre-compiled LCModel binaries for Windows, macOS, and Linux to analyze magnetic resonance spectroscopy data.
mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance
Legacy fMRI preprocessing pipeline leveraging AFNI, ANTs, FSL, and other neuroimaging tools for signal processing and analysis.
An R package for reading, writing, and visualizing medical imaging data in ANALYZE, NIfTI, and AFNI formats.
A collection of small shell and R utilities for neuroimaging data wrangling and BIDS processing.
Algorithm to assess intrinsic excitation-inhibition imbalance in resting-state fMRI data, as published in eLife 2020.
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