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Medical Imaging

53 projects

Showing 36 of 53 projects

awesome-semantic-segmentation
awesome-semantic-segmentation

A curated list of semantic segmentation papers, code, datasets, and resources across various deep learning frameworks.

#instance-segmentation#deep-learning#awesome-list
Stars10.8k
Forks2.5k
Last commit5 years ago
MONAI
MONAIPython

A PyTorch-based open-source framework for deep learning in healthcare imaging, providing domain-specific tools and workflows.

#model-training#medical-image-computing#deep-learning
Stars8.8k
Forks1.7k
Last commit1 day ago
Medical Data for Machine Learning
Medical Data for Machine Learning

A curated list of publicly available medical datasets for machine learning, covering imaging, EHRs, literature, and speech.

#data-curation#research-resource#medical-datasets
Stars6.0k
Forks1.1k
Last commit2 years ago
OHIF
OHIFTypeScript

A zero-footprint, configurable, and extensible web-based medical imaging viewer for DICOM and oncology data.

#image-analysis#progressive-web-app#cancer-imaging-research
Stars4.4k
Forks4.4k
Last commit18 hours ago
Healthcare
Healthcare

A curated list of awesome open source healthcare software, libraries, tools, and resources.

#open-source#awesome-list#health-it
Stars4.0k
Forks569
Last commit5 months ago
3D Slicer
3D SlicerC++

A free, open-source multi-platform software for 3D visualization and medical image analysis.

#image-analysis#qt#3d-visualization
Stars2.7k
Forks799
Last commit16 hours ago
Cornerstone
CornerstoneJavaScript

A lightweight JavaScript library for displaying medical images in web browsers using HTML5 canvas.

#cornerstone#nci-itcr#dicom
Stars2.1k
Forks591
Last commit2 years ago
Fellow Oak DICOM
Fellow Oak DICOMC#

A cross-platform .NET library for reading, writing, and communicating with DICOM medical imaging files and services.

#nuget#dependency-injection#async
Stars1.2k
Forks670
Last commit7 days ago
TorchXRayVision
TorchXRayVisionJupyter Notebook

An open-source library providing chest X-ray datasets, pre-trained models, and tools for medical imaging research and analysis.

#medical-application#transfer-learning#chest-xray
Stars1.2k
Forks258
Last commit4 days ago
dcm2niix
dcm2niixC++

Converts neuroimaging data from the DICOM format to the NIfTI format and generates BIDS JSON sidecars.

#jpeg-image#nifti#neuroscience
Stars1.2k
Forks272
Last commit1 day ago
dicom
dicomGo

A high-performance Go library and CLI tool for parsing, writing, and working with DICOM medical image files.

#golang-package#go-library#cli-tool
Stars1.1k
Forks169
Last commit4 months ago
InVesalius
InVesaliusPython

Open-source software for 3D medical imaging reconstruction from CT and MRI DICOM files.

#ct-scan#tomographic-images#3d-reconstruction
Stars810
Forks455
Last commit1 day ago
UNI
UNIJupyter Notebook

A vision transformer foundation model pre-trained on over 200 million pathology images for computational pathology tasks.

#foundation#mahmoodlab#whole-slide-image-analysis
Stars793
Forks95
Last commit1 year ago
MicroSAM
MicroSAMJupyter Notebook

Interactive segmentation and tracking tools for microscopy images built on Segment Anything.

#bioimage-analysis#microscopy#segment-anything
Stars741
Forks115
Last commit1 day ago
itk-jupyter-widgets
itk-jupyter-widgetsPython

A Python interface for interactive web-based visualization of multidimensional images, point sets, and geometry in Jupyter notebooks.

#scientific-visualization#scientific-computing#image-analysis
Stars624
Forks84
Last commit
Papaya
PapayaJavaScript

A pure JavaScript medical research image viewer for DICOM and NIFTI formats with advanced visualization tools.

#image-analysis#javascript-viewer#research-tools
Stars584
Forks208
Last commit2 years ago
dicom-rs
dicom-rsRust

A pure Rust ecosystem of libraries and tools for DICOM-compliant systems, enabling reading, writing, and processing of medical imaging data.

#hacktoberfest#healthcare-it#file-format
Stars569
Forks127
Last commit3 days ago
CONCH
CONCHPython

A vision-language foundation model for computational pathology, pretrained on 1.17M histopathology image-caption pairs for diverse AI tasks.

#biomedical-nlp#bioimage-analysis#vision-language-pathology
Stars538
Forks54
Last commit
U-Net
U-NetPython

A U-Net implementation for brain tumor segmentation using the BRATS 2017 dataset with data augmentation and dice loss.

#tensorlayer#deep-learning#brain-tumor
Stars536
Forks178
Last commit7 years ago
Dicoogle
DicoogleJava

An extensible, open-source PACS archive software that replaces traditional centralized databases with agile indexing and retrieval for medical images.

#data-indexing#open-source#medical-informatics
Stars535
Forks148
Last commit1 month ago
DeepSlide
DeepSlidePython

A sliding window framework for classifying high-resolution whole-slide microscopy and histopathology images using deep neural networks.

#medical-image-analysis#microscopy#resnet
Stars520
Forks142
Last commit2 years ago
OpenSlide
OpenSlideC

A C library for reading whole slide image files (virtual slides) with a consistent API across multiple vendor formats.

#c-library#microscopy#c
Stars519
Forks270
Last commit11 days ago
DICOM Server
DICOM ServerC#

An open-source implementation of the DICOMweb standard for medical imaging data storage and retrieval.

#azure#rest-api#dicomweb
Stars517
Forks194
Last commit2 days ago
PathML
PathMLPython

An open-source toolkit for scalable, standardized computational pathology analysis, enabling AI and machine learning on large imaging datasets.

#image-analysis#microscopy#whole-slide-image
Stars467
Forks87
Last commit2 months ago
CellVit++
CellVit++Python

A vision transformer-based deep learning model for automated instance segmentation and classification of cell nuclei in histopathology images.

#biomedical-research#ai#microscopy
Stars400
Forks73
Last commit1 year ago
PyImSegm
PyImSegmPython

A Python toolbox for image segmentation featuring superpixel segmentation, object center detection, and region growing with shape priors.

#superpixel-segmentation#superpixels#cython
Stars378
Forks74
Last commit4 years ago
Neurite
NeuritePython

A neural networks toolbox for medical image analysis, providing specialized layers, models, and utilities for TensorFlow/Keras.

#brain#medical-image-computing#deep-learning
Stars376
Forks77
Last commit26 days ago
Brayns
BraynsC++

A large-scale scientific visualization platform for interactive ray-tracing of neurons and other biological data.

#scientific-visualization#brain#neurons
Stars304
Forks46
Last commit7 months ago
Kaapana
KaapanaPython

An open-source toolkit for federated learning and AI workflow management in medical imaging analysis.

#platform#federated-learning#ai
Stars276
Forks67
Last commit1 day ago
Awesome medical imaging
Awesome medical imaging

A curated list of open-source software tools for medical imaging research, including segmentation, visualization, and deep learning libraries.

#nifti#deep-learning#neural-networks
Stars250
Forks45
Last commit7 months ago
DICOMcloud
DICOMcloudC#

A standalone DICOMweb server with RESTful implementation of QIDO-RS, WADO-RS, STOW-RS, and WADO-URI services for medical imaging.

#wado#wado-rs#healthcare-it
Stars235
Forks106
Last commit2 years ago
CellSAM
CellSAMPython

A foundation model for cell segmentation that achieves state-of-the-art performance across diverse cellular targets and imaging modalities.

#bioimage-analysis#microscopy#napari-plugin
Stars220
Forks40
Last commit4 months ago
PyTorch Connectomics
PyTorch ConnectomicsPython

A PyTorch-based segmentation toolbox for electron microscopy connectomics, enabling neural structure analysis in 3D volumes.

#neuroscience#microscopy#3d-segmentation
Stars202
Forks87
Last commit18 days ago
Evil-DICOM
Evil-DICOMC#

A simple C# library for reading, writing, and manipulating DICOM files in medical imaging applications.

#healthcare-software#nuget-package#research-tools
Stars192
Forks96
Last commit2 years ago
DAGAN
DAGANPython

A deep learning model using generative adversarial networks for fast compressed sensing MRI reconstruction.

#biomedical-engineering#image-reconstruction#deep-learning
Stars181
Forks52
Last commit7 years ago
Slim
SlimTypeScript

A web-based DICOM slide microscopy viewer and annotation tool for imaging data science and computational pathology.

#image-analysis#computational-pathology#dicomweb
Stars172
Forks48
Last commit23 hours ago
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