MicroSAM
Interactive segmentation and tracking tools for microscopy images built on Segment Anything.
What is MicroSAM?
Micro-SAM is an open-source toolkit that adapts the Segment Anything Model (SAM) for microscopy image analysis. It provides interactive tools for segmenting and tracking biological structures in 2D and 3D microscopy images with minimal user input. The project includes fine-tuned models optimized for microscopy data to improve accuracy and efficiency.
Bioimage analysts, computational biologists, and researchers working with microscopy data who need efficient, interactive segmentation and tracking tools for cells and subcellular structures.
Developers choose Micro-SAM for its specialized fine-tuned models for microscopy, support for both 2D and 3D segmentation plus tracking, and seamless integration with napari for an interactive workflow, reducing manual annotation time.
Overview
Segment Anything for Microscopy
Use Cases
Best For
- Interactive segmentation of cells in 2D microscopy images
- Volumetric segmentation of organelles in 3D electron microscopy data
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