Neuroscience
Showing 27 of 27 projects
An open-source implementation of Hierarchical Temporal Memory (HTM) for anomaly detection and prediction of streaming data.
An open-source computational neuroscience course with tutorials, exercises, and interactive materials for students and researchers.
An open-source Python library for creating and running psychology and neuroscience experiments with both GUI and code interfaces.
A curated list of awesome neuroscience libraries, software, and resources for researchers and developers.
A free, open-source Python simulator for spiking neural networks, designed for ease of use and flexibility.
Converts neuroimaging data from the DICOM format to the NIfTI format and generates BIDS JSON sidecars.
A curated directory of academic institutions and principal investigators in computational neuroscience worldwide.
A Python framework for creating flexible and robust spike sorting pipelines in neuroscience electrophysiology.
A Python library for creating high-quality 3D visualizations of neuroanatomical data in atlas space.
A decentralized data management system built on Git and git-annex for versioning and distributing large datasets.
A complete pipeline for processing two-photon calcium imaging data, including registration, ROI detection, signal extraction, and spike deconvolution.
A large-scale scientific visualization platform for interactive ray-tracing of neurons and other biological data.
A curated list of summer schools in neuroscience and related fields, organized by application deadlines.
Automated 3D cell detection and classification in large-scale volumetric brain images using deep learning.
An R package for performing graph theory analyses of brain MRI data from structural, DTI, and resting-state fMRI connectivity.
A PyTorch-based segmentation toolbox for electron microscopy connectomics, enabling neural structure analysis in 3D volumes.
A Python API for downloading and processing neuroanatomical atlas data from multiple sources.
A Python library for serverless, random-access reading and writing of Neuroglancer Precomputed format volumes, meshes, and skeletons.
Automated 3D brain image registration tool for aligning sample data with anatomical atlases across multiple species.
An open-source Python toolbox for real-time EEG monitoring, analysis, and sensory stimulation during sleep for dream engineering research.
A compact spiking neural network library built on JAX and Haiku, offering high-performance training via surrogate gradient descent and neuroevolution.
A platform-independent lightweight Python library for designing and conducting timing-critical behavioral and neuroimaging experiments.
A deep learning tool for automatic axon and myelin segmentation from microscopy images using convolutional neural networks.
R package for segmentation, registration, and web-based atlas generation from microscope brain images.
An all-in-one MATLAB software suite for state-of-the-art processing and quantitative analysis of in-vivo magnetic resonance spectroscopy (MRS) data.
An R package for 3D visualization and analysis of biological image data, especially single neuron tracings.
An R package for 3D visualization and analysis of biological image data, especially single neuron tracings.
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