AxonDeepSeg
A deep learning tool for automatic axon and myelin segmentation from microscopy images using convolutional neural networks.
What is AxonDeepSeg?
AxonDeepSeg is a deep learning-based software tool that automatically segments axons and myelin from microscopy images. It uses a convolutional neural network to classify pixels into axon, myelin, or background categories, addressing the need for accurate and efficient analysis of neural tissue morphology in neuroscience research.
Neuroscience researchers, bioimage analysts, and computational biologists who work with microscopy data and require automated segmentation of neural structures for quantitative analysis.
Developers choose AxonDeepSeg for its specialized focus on axon and myelin segmentation, open-source accessibility, integration with popular tools like Napari, and proven performance in scientific publications, offering a reproducible alternative to manual or proprietary segmentation methods.
Overview
Axon/Myelin segmentation using Deep Learning
Use Cases
Best For
- Automating axon and myelin segmentation in histology images
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