Microscopy Analysis
4 projects
Showing 4 of 4 projects
AxonDeepSegPython
A deep learning tool for automatic axon and myelin segmentation from microscopy images using convolutional neural networks.
#axon-segmentation#bioimage-analysis#neuroscience
Stars127
Forks33
Last commit4 days ago
PlantSegPython
A tool for cell instance aware segmentation in densely packed 3D volumetric images, originally developed for plant tissues.
#bioimage-analysis#neural-network#3d-segmentation
Stars125
Forks42
Last commit2 days ago
EBImageR
An R package for image processing and analysis with a focus on microscopy and biological imaging.
#image-analysis#r-package#bioconductor
Stars77
Forks29
Last commit1 year ago
Big-fishPython
A Python toolbox for analyzing smFISH microscopy images, including spot detection and cell segmentation.
#scientific-computing#data-science#smfish
Stars76
Forks24
Last commit2 years ago
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