HALFpipe

fmri_processing_scripts

legacy signal processing leveraging afni, ants, fsl, nipy, robex, and wavelet toolbox - brnfswdktm

XCP-D

Post-processing and noise regression pipeline picks up right where fMRIprep ends

afni_proc.py

Best practice pipelines with pre-configured blocks using AFNI

clpipe

Uses fmriprep for preprocessing fMRI data and implements a variety of additional processing steps important for functional connectivity analyses such as nuisance regression and filtering