afni_proc.py

fmri_processing_scripts

legacy signal processing leveraging afni, ants, fsl, nipy, robex, and wavelet toolbox - brnfswdktm

XCP-D

Post-processing and noise regression pipeline picks up right where fMRIprep ends

clpipe

Uses fmriprep for preprocessing fMRI data and implements a variety of additional processing steps important for functional connectivity analyses such as nuisance regression and filtering

HCP Pipeline

Pipeline scripts implement the Minimal Preprocessing Pipeline (MPP) described in Glasser et al. 2013