Imagej
Showing 17 of 17 projects
An open-source, plugin-based image processing framework in Python that integrates with numpy-based libraries like scikit-image and OpenCV.
A batteries-included distribution of ImageJ for scientific image processing, focused on life sciences research.
A curated list of software, tools, pipelines, and plugins for image analysis in biological research.
A library of mathematical morphology methods and plugins for ImageJ, extending its capabilities for 2D/3D image analysis.
A complete framework for neuronal morphometry, from tracing and reconstruction to analysis, visualization, and modeling.
ImageJ functions and macros for working with thermal image files
A collection of Fiji/ImageJ plugins for trabecular geometry and whole bone shape analysis in skeletal biology.
A library and plugin suite for ImageJ providing color space conversions, color calibration, and white balance tools.
An interactive image processing program for biologists written in Python.
An ImageJ/FIJI plugin that color-codes Z-stack microscopy images by depth using LUTs for enhanced 3D visualization.
An ImageJ macro for calculating the Modulation Transfer Function (MTF) from knife-edge or slanted-edge measurements.
An R package for importing, analyzing, and visualizing single-particle tracking data from TrackMate XML outputs.
A modular ImageJ/Fiji plugin for assembling image and object analysis workflows with batch processing capabilities.
Fiji/ImageJ macros to quickly add a scale bar to an image, with size relative to image dimensions for consistent appearance.
QuimP is software for tracking cellular shape changes and dynamic distributions of fluorescent reporters at the cell membrane.
An Igor Pro package for analyzing 2D cell migration data from manual tracking in ImageJ/FIJI.
An ImageJ plugin that converts segmented images into Spatial SBML models for spatial biological simulations.
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