Fiji
Showing 9 of 9 projects
A scalable cell tracking method for 2D, 3D, and multichannel timelapse recordings, robust under segmentation uncertainty.
A library of mathematical morphology methods and plugins for ImageJ, extending its capabilities for 2D/3D image analysis.
A complete framework for neuronal morphometry, from tracing and reconstruction to analysis, visualization, and modeling.
ImageJ functions and macros for working with thermal image files
An ImageJ/FIJI plugin that color-codes Z-stack microscopy images by depth using LUTs for enhanced 3D visualization.
A modular ImageJ/Fiji plugin for assembling image and object analysis workflows with batch processing capabilities.
Fiji/ImageJ macros to quickly add a scale bar to an image, with size relative to image dimensions for consistent appearance.
An automated Fiji-based image analysis pipeline for 3D quantification of zebrafish brain vasculature from light sheet fluorescence microscopy data.
An ImageJ plugin that converts segmented images into Spatial SBML models for spatial biological simulations.
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