An automated Fiji-based image analysis pipeline for 3D quantification of zebrafish brain vasculature from light sheet fluorescence microscopy data.
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
WebGL-based viewer for volumetric data
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
A Python package to visualise neuroanatomical data in atlas space
Automated 3D cell detection in very large images
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