Light Sheet Microscopy
4 projects
Showing 4 of 4 projects
CellfinderPython
Automated 3D cell detection and classification in large-scale volumetric brain images using deep learning.
#image-analysis#light-sheet-microscopy#bioimage-analysis
Stars231
Forks79
Last commit3 days ago
ZetaStitcherPython
A Python tool for stitching large volumetric images from light-sheet fluorescence microscopy.
#scientific-computing#light-sheet-microscopy#neuroscience
Stars47
Forks7
Last commit9 months ago
TrailMapPython
A 3D convolutional network software package for extracting axonal and filamentous structures from cleared brain imaging data.
#axon-segmentation#light-sheet-microscopy#bioimage-analysis
Stars47
Forks16
Last commit2 months ago
ZVQ - Zebrafish Vascular QuantificationImageJ Macro
An automated Fiji-based image analysis pipeline for 3D quantification of zebrafish brain vasculature from light sheet fluorescence microscopy data.
#lightsheet#light-sheet-microscopy#bioimage-analysis
Stars11
Forks0
Last commit
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