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Imagej Plugin

7 projects

Showing 7 of 7 projects

MorpholibJ
MorpholibJJava

A library of mathematical morphology methods and plugins for ImageJ, extending its capabilities for 2D/3D image analysis.

#watershed-segmentation#scientific-computing#image-analysis
Stars124
Forks49
Last commit2 months ago
ThunderSTORM
ThunderSTORMJava

An open-source ImageJ plugin for automated processing, analysis, and visualization of single molecule localization microscopy (SMLM) data.

#scientific-imaging#single-molecule-localization-microscopy#imagej-plugin
Stars110
Forks44
Last commit7 years ago
SNT
SNTJava

A complete framework for neuronal morphometry, from tracing and reconstruction to analysis, visualization, and modeling.

#biophysical-modeling#neurons#python-integration
Stars60
Forks19
Last commit1 day ago
Ijp-color
Ijp-colorScala

A library and plugin suite for ImageJ providing color space conversions, color calibration, and white balance tools.

#color-calibration#color-chart#color-space-conversion
Stars26
Forks2
Last commit4 months ago
Z-stack Depth Color Code
Z-stack Depth Color CodeJava

An ImageJ/FIJI plugin that color-codes Z-stack microscopy images by depth using LUTs for enhanced 3D visualization.

#scientific-visualization#microscopy#3d-visualization
Stars25
Forks7
Last commit8 months ago
MIA
MIAJava

A modular ImageJ/Fiji plugin for assembling image and object analysis workflows with batch processing capabilities.

#image-analysis#batch-processing#modular
Stars16
Forks3
Last commit2 days ago
XitoSBML
XitoSBMLHTML

An ImageJ plugin that converts segmented images into Spatial SBML models for spatial biological simulations.

#systems-biology#bioimage-analysis#biological-simulation
Stars7
Forks5
Last commit4 years ago

Related Tags

#Imagej6#Fiji5#Image Processing4#Scientific Imaging3#Bioimage Analysis3
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