Open Science
Showing 35 of 71 projects
Web-components for creating interactive scientific articles with reactive variables, equations, and charts.
A curated list of software, tools, pipelines, and plugins for image analysis in biological research.
An R package to programmatically retrieve chemical information from various web databases and APIs.
A curated directory of open-source projects, tools, and resources for microscopy research and development.
A Python API for downloading and processing neuroanatomical atlas data from multiple sources.
A Julia package for reproducible data setup, automating dataset downloads and management for scientific computing.
A web application for visualizing astronomical HiPS data directly in the browser, embeddable in any webpage.
An open platform for hosting and participating in data science challenges focused on open science and open data.
Automated 3D brain image registration tool for aligning sample data with anatomical atlases across multiple species.
A PhD-level course on computational economics covering Python, Julia, and economic modeling techniques.
A Java-based 2D chemical structure editor and viewer built on the Chemistry Development Kit (CDK).
A deep learning-based, threshold-agnostic, subpixel-accurate 2D and 3D spot detection method for fluorescence microscopy and spatial transcriptomics.
Ember.js front-end application for the Open Science Framework (OSF) platform.
A functional bioinformatics library for Scala providing strongly-typed DNA/RNA/protein sequences, transcription, translation, and alignment utilities.
Replication package and dataset for a research paper on software architecture practices in ROS-based robotic systems.
An open-source Python suite for light microscopy acquisition, storage, visualization, and analysis, with strong support for single-molecule localization techniques.
An all-in-one MATLAB software suite for state-of-the-art processing and quantitative analysis of in-vivo magnetic resonance spectroscopy (MRS) data.
A curated list of software, datasets, and publications for image-based profiling of biological phenotypes in drug discovery and cell biology.
A curated list of software, datasets, and publications for image-based profiling of biological phenotypes in drug discovery and cell biology.
A cross-platform desktop application for curating and sharing biomedical research data and software according to FAIR guidelines.
A curated collection of resources for applying machine learning to biomedical and healthcare imaging applications.
An open-source solution for the Airbus Ship Detection Challenge, providing a benchmark and base for ship detection in satellite imagery.
Pure Python library for reading NIS Elements ND2 microscopy images and metadata using the pims framework.
A web app, CLI tool, and library for validating Brain Imaging Data Structure (BIDS) compliance.
A machine learning pipeline that predicts 70 cell health phenotypes from Cell Painting image-based morphology profiles.
A curated list of software, tools, and resources for exploring, organizing, and analyzing neuroimaging data with a focus on MRI.
A curated collection of online resources for neuroimaging methods including MRI, fMRI, EEG, and MEG.
A curated collection of neuroscience, data science, and open science resources, tools, and AI productivity aids for researchers.
A Quarto-powered blog for the Bioconductor community to share news, tutorials, and updates.
A desktop application for retrieving, normalizing, and exploring document collections from scientific, institutional, and web sources without coding.
A collection of pre-compiled LCModel binaries for Windows, macOS, and Linux to analyze magnetic resonance spectroscopy data.
A research framework for neutrino physics simulations and data analysis.
An HTML5/JavaScript experiment that collects data about human shape recognition through interactive web-based tasks.
Python package providing one-line access to 38+ open research datasets from Latin America.
A JupyterLab extension that enables publishing notebooks directly to Kyso for sharing and collaboration.
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