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Drug Discovery

52 projects

Showing 16 of 52 projects

awesome-molecular-docking
awesome-molecular-docking

A curated list of resources for molecular docking, protein-protein docking, and related computational biology tasks.

#cheminformatics#ai-aided-drug-discovery#protein-structure
Stars106
Forks8
Last commit3 years ago
Awesome Drug Interactions, Synergy, and Polypharmacy Prediction
Awesome Drug Interactions, Synergy, and Polypharmacy Prediction

A curated collection of readings and resources for relational deep learning models applied to drug pair scoring tasks.

#pharmacology#relational-learning#drug-synergy
Stars101
Forks17
Last commit14 days ago
Awesome Drug Synergy, Interaction and Polypharmacy Prediction
Awesome Drug Synergy, Interaction and Polypharmacy Prediction

A curated collection of resources and survey paper on relational deep learning methods for drug pair scoring tasks.

#pharmacology#biomedical-research#relational-learning
Stars101
Forks17
Last commit14 days ago
Cytodata
CytodataTypeScript

A curated list of software, datasets, and publications for image-based profiling of biological phenotypes in drug discovery and cell biology.

#image-analysis#bioimage-analysis#scientific-software
Stars98
Forks17
Last commit11 days ago
Cytodata
CytodataTypeScript

A curated list of software, datasets, and publications for image-based profiling of biological phenotypes in drug discovery and cell biology.

#image-analysis#bioimage-analysis#biological-datasets
Stars98
Forks17
Last commit
dgidb
dgidbRuby

A Ruby on Rails web application for querying and exploring drug-gene interaction data from The Genome Institute's database.

#biomedical-research#api#genomics
Stars97
Forks32
Last commit1 year ago
TypeDB OSI - Biomedical Knowledge Graph
TypeDB OSI - Biomedical Knowledge GraphPython

An open-source biomedical knowledge graph for drug discovery, precision medicine, and drug repurposing research.

#biomedical-research#data-integration#typeql
Stars90
Forks35
Last commit1 year ago
Drug Mechanism Database (DrugMechDB)
Drug Mechanism Database (DrugMechDB)Jupyter Notebook

A curated database of mechanistic paths from drugs to diseases via biological entities, using the Biolink Model for semantic interoperability.

#computational-biology#drug-mechanism#semantic-interoperability
Stars79
Forks24
Last commit
NeoDTI
NeoDTIPython

A neural network model that integrates neighbor information from heterogeneous networks to discover new drug-target interactions.

#pharmacology#deep-learning#heterogeneous-networks
Stars79
Forks32
Last commit5 years ago
rise-ui
rise-uiRust

Toy toolkit, toy language, with moral support @rustlang_ru community

#drug-discovery#gui#toy-language
Stars75
Forks6
Last commit7 years ago
Access from GitHub
Access from GitHubHTML

A machine learning pipeline that predicts 70 cell health phenotypes from Cell Painting image-based morphology profiles.

#image-analysis#morphological-profiling#open-science
Stars41
Forks10
Last commit4 years ago
RECOVER
RECOVERJupyter Notebook

A sequential model optimization platform that uses active learning to discover synergistic drug combinations for cancer treatment with minimal screening.

#experimental-design#synergistic-drugs#computational-biology
Stars26
Forks19
Last commit
chemmodlab
chemmodlabR

A cheminformatics modeling laboratory for fitting and assessing machine learning models, tailored to virtual screening for drug discovery.

#statistical-analysis#cheminformatics#qsar
Stars18
Forks8
Last commit11 months ago
DeepAEG
DeepAEGPython

A deep learning model for predicting cancer drug response using data enhancement and edge-collaborative update strategies.

#cancer-drug-response#genomic-data#graph-neural-networks
Stars4
Forks1
Last commit2 years ago
eiR
eiRR

Accelerated structure similarity searching for large small molecule datasets using embedding and indexing.

#cheminformatics#embedding#r-package
Stars4
Forks0
Last commit1 year ago
MCPINN
MCPINNPython

A multi-channel neural network for predicting compound-protein interactions using molecular and protein sequence embeddings.

#rdkit#neural-networks#compound-protein-interaction
Stars4
Forks3
Last commit3 years ago
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