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Chemistry

21 projects

Showing 21 of 21 projects

Chemprop
ChempropPython

A machine learning package implementing message passing neural networks for predicting molecular and reaction properties.

#graph-neural-networks#python-library#deep-learning
Stars2.4k
Forks745
Last commit2 days ago
awesome-python-chemistry
awesome-python-chemistry

A curated list of awesome Python frameworks, libraries, software, and resources for chemistry and cheminformatics.

#scientific-computing#cheminformatics#simulation
Stars1.4k
Forks230
Last commit8 months ago
openbabel
openbabelC++

An open-source chemical toolbox for converting, analyzing, and manipulating molecular data across 90+ file formats.

#scientific-computing#cheminformatics#file-format-conversion
Stars1.3k
Forks477
Last commit3 days ago
Psi
PsiC++

An open-source suite of ab initio quantum chemistry programs for high-accuracy molecular simulations, written in C++ with a Python driver.

#scientific-computing#high-performance-computing#ab-initio
Stars1.2k
Forks505
Last commit2 days ago
3Dmol.js
3Dmol.jsJupyter Notebook

WebGL-accelerated JavaScript library for interactive molecular visualization in web applications.

#scientific-visualization#3d-graphics#computational-biology
Stars984
Forks220
Last commit23 days ago
Cheminformatics
Cheminformatics

A curated list of awesome cheminformatics software, libraries, resources, and tools, primarily command-line based and open-source.

#scientific-computing#cheminformatics#open-source
Stars869
Forks146
Last commit2 years ago
chainer-chemistry
chainer-chemistryPython

A deep learning library built on Chainer for molecular property prediction using graph convolutional neural networks.

#graph-neural-networks#molecular-machine-learning#chainer
Stars700
Forks132
Last commit3 years ago
Chemistry Development Kit
Chemistry Development KitJava

An open-source Java library for cheminformatics and bioinformatics, providing algorithms for molecular representation, analysis, and data processing.

#code4lib#cheminformatics#java-library
Stars585
Forks176
Last commit2 days ago
ChemBERTa-2
ChemBERTa-2Jupyter Notebook

A collection of BERT-like transformer models pre-trained on chemical SMILES data for drug design and property prediction.

#chemical-modeling#deep-learning#bert
Stars496
Forks75
Last commit1 year ago
Molecular Transformer
Molecular TransformerPython

A sequence-to-sequence transformer model for predicting chemical reaction pathways (retrosynthesis) with uncertainty calibration.

#retrosynthesis#reaction-prediction#transformer-model
Stars425
Forks82
Last commit4 years ago
Indigo
IndigoC++

A universal cheminformatics toolkit with database search engines, a core library, and utilities for molecular processing.

#scientific-computing#cheminformatics#webassembly
Stars397
Forks128
Last commit2 days ago
periodic-table-cli
periodic-table-cliJavaScript

An interactive, terminal-based Periodic Table of Elements with navigation, search, and 20+ data visualization modes.

#science#periodic-table#educational
Stars296
Forks18
Last commit10 months ago
opem
opemPython

An open-source modeling tool for evaluating the performance of proton-exchange membrane fuel cells (PEMFC) using static and dynamic models.

#research-tool#scientific-computing#simulation
Stars229
Forks64
Last commit1 month ago
MolecularGraph.jl
MolecularGraph.jlJulia

A Julia toolkit for graph-based molecule modeling, cheminformatics analysis, and chemical structure manipulation.

#julia#cheminformatics#graph
Stars224
Forks26
Last commit12 days ago
orthopy
orthopy

A Python library providing orthogonal polynomial classes for lines, triangles, disks, spheres, n-cubes, and nD spaces with stable recurrence schemes.

#scientific-computing#mathematics#chebyshev-polynomials
Stars190
Forks18
Last commit27 days ago
rdeditor
rdeditorPython

A simple, open-source graphical molecule editor built with RDKit and PySide6 for chemical structure drawing and editing.

#desktop-application#cheminformatics#molecule-editor
Stars177
Forks38
Last commit1 month ago
ChemML
ChemMLPython

A Python machine learning and informatics suite for analyzing, mining, and modeling chemical and materials data.

#data-science#deep-learning#materials-science
Stars176
Forks33
Last commit1 month ago
Summit
SummitJupyter Notebook

A Python toolkit for optimizing chemical reactions using machine learning strategies and benchmarks.

#self-optimization#nelder-mead#tsemo
Stars148
Forks31
Last commit1 year ago
JChemPaint
JChemPaintJava

A Java-based 2D chemical structure editor and viewer built on the Chemistry Development Kit (CDK).

#scientific-software#chemical-informatics#open-science
Stars141
Forks44
Last commit1 month ago
Awesome Drug Interactions, Synergy, and Polypharmacy Prediction
Awesome Drug Interactions, Synergy, and Polypharmacy Prediction

A curated collection of readings and resources for relational deep learning models applied to drug pair scoring tasks.

#pharmacology#relational-learning#drug-synergy
Stars99
Forks15
Last commit3 years ago
Awesome Drug Synergy, Interaction and Polypharmacy Prediction
Awesome Drug Synergy, Interaction and Polypharmacy Prediction

A curated collection of resources and survey paper on relational deep learning methods for drug pair scoring tasks.

#pharmacology#biomedical-research#relational-learning
Stars99
Forks15
Last commit3 years ago

Related Tags

#Python9#Computational Chemistry8#Machine Learning8#Scientific Computing7#Drug Discovery7#Cheminformatics7#Molecular Modeling7#Deep Learning6#Bioinformatics5#Python Library4#Materials Science4#Smiles4
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