Variant Effect Prediction
3 projects
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ProteinGymHTML
A comprehensive benchmark suite for evaluating protein fitness prediction models using deep mutational scanning and clinical variant data.
#protein-fitness#variant-effect-prediction#protein
Stars430
Forks57
Last commit2 months ago
GPN (Genomic Pre-trained Network)Jupyter Notebook
A collection of genomic language models for predicting variant effects and evolutionary constraints from DNA sequences.
#variant-effect-prediction#transformer-models#deep-learning
Stars342
Forks48
Last commit
SeiPython
A deep learning framework for predicting chromatin profiles and sequence regulatory activities from DNA sequences and variants.
#variant-effect-prediction#deep-learning#computational-biology
Stars115
Forks11
Last commit3 years ago
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