Spatial Transcriptomics
3 projects
Showing 3 of 3 projects
SquidpyPython
A scalable Python toolkit for analyzing and visualizing spatial molecular data from tissue sections.
#image-analysis#single-cell-analysis#single-cell-rna-seq
Stars572
Forks114
Last commit12 hours ago
PathMLPython
An open-source toolkit for scalable, standardized computational pathology analysis, enabling AI and machine learning on large imaging datasets.
#image-analysis#microscopy#whole-slide-image
Stars452
Forks89
Last commit1 month ago
ProsegRust
A probabilistic cell segmentation method for spatial transcriptomics data from platforms like Xenium, CosMx, MERSCOPE, and Visium HD.
#probabilistic-modeling#single-cell-analysis#computational-biology
Stars172
Forks18
Last commit10 days ago
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