Napari Plugin

MicroSAMJupyter Notebook

Interactive segmentation and tracking tools for microscopy images built on Segment Anything.

CellfinderPython

Automated 3D cell detection and classification in large-scale volumetric brain images using deep learning.

CellSAMPython

A foundation model for cell segmentation that achieves state-of-the-art performance across diverse cellular targets and imaging modalities.

NelliePython

An automated pipeline for organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy.

Napari-aicsimageioPython

A napari plugin for reading multiple microscopy and general image file formats directly into the viewer using pure Python.