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Computational Pathology

7 projects

Showing 7 of 7 projects

UNI
UNIJupyter Notebook

A vision transformer foundation model pre-trained on over 200 million pathology images for computational pathology tasks.

#foundation#mahmoodlab#whole-slide-image-analysis
Stars752
Forks87
Last commit1 year ago
HoVer-Net
HoVer-NetPython

A PyTorch-based deep learning model for simultaneous nuclear instance segmentation and classification in histopathology images.

#medical-image-analysis#instance-segmentation#cell-classification
Stars722
Forks272
Last commit2 years ago
CONCH
CONCHPython

A vision-language foundation model for computational pathology, pretrained on 1.17M histopathology image-caption pairs for diverse AI tasks.

#biomedical-nlp#bioimage-analysis#vision-language-pathology
Stars512
Forks52
Last commit1 year ago
PathML
PathMLPython

An open-source toolkit for scalable, standardized computational pathology analysis, enabling AI and machine learning on large imaging datasets.

#image-analysis#microscopy#whole-slide-image
Stars455
Forks87
Last commit21 days ago
Slim
SlimTypeScript

A web-based DICOM slide microscopy viewer and annotation tool for imaging data science and computational pathology.

#image-analysis#computational-pathology#dicomweb
Stars165
Forks47
Last commit2 days ago
FastPathology
FastPathologyC++

Open-source software for deep learning-based analysis and visualization of whole slide images in digital pathology.

#opencl#opengl#gui-application
Stars142
Forks26
Last commit2 years ago
MAPS
MAPSJupyter Notebook

A machine learning approach for rapid, pathologist-level cell type annotation from spatial proteomics data like MIBI and CODEX.

#cell-type-annotation#computational-pathology#codex
Stars68
Forks10
Last commit2 years ago

Related Tags

#Medical Imaging5#Histopathology4#Digital Pathology4#Deep Learning3#Pytorch3#Pathology3#Machine Learning3
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