Scanpy
FrameworkOpen-source projects built with Scanpy
There are currently 9 open-source projects built with Scanpy, with a combined total of 3.9k GitHub stars. The most common language among these projects is Python.
Showing 9 open-source projects
A transformer-based foundation model pretrained on millions of single-cell profiles for generative AI tasks in single-cell multi-omics.
A scalable Python toolkit for analyzing and visualizing spatial molecular data from tissue sections.
An automated cell type annotation tool for single-cell RNA-seq data using logistic regression classifiers.
A Python package for benchmarking and evaluating single-cell genomics data integration methods.
A geometric deep learning model that predicts transcriptional outcomes of single and multi-gene perturbations from single-cell RNA-seq data.
A BERT-based foundation model pretrained on large-scale scRNA-seq data for automated cell type annotation in single-cell analysis.
A multitask generative pre-trained language model for zero-shot cell type annotation, batch integration, and conditional cell generation in single-cell transcriptomics.
A Python library for integrating multiomic single-cell data using product-of-experts variational autoencoders.
A fast spatial deconvolution tool for transcriptomics data that scales to million-spot datasets while preserving rare cell type signals.
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