MIMIC-III

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Overview

paper - Deidentified health data from ~60,000 intensive care unit admissions. Requires completion of an online training course (CITI training) and acceptance of a data use agreement prior to use

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Biomedical Information Extraction425

Columbia Open Health Data

paper - A database of prevalence and co-occurrence frequencies of conditions, drugs, procedures, and patient demographics extracted from electronic health records. Does not include original record text

The MIMIC Chest X-Ray database. Contains more than 377,000 radiographic images and accompanying free-text radiology reports. As with MIMIC-III, requires acceptance of a data use agreement

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eICU Collaborative Research Database

paper - a database of observations from more than 200 thousand intensive care unit admissions, with consistent structure. Requires registration, training course completion, and data use agreement

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Comparative Toxicogenomics Database

paper - A database of manually curated associations between chemicals, gene products, phenotypes, diseases, and environmental exposures. Useful for assembling ontologies of the related concepts, such as types of chemicals

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