Bcbio
A validated, scalable, community-developed pipeline for variant calling, RNA-seq, and small RNA analysis in genomic sequencing.
What is Bcbio?
bcbio-nextgen is an open-source, automated pipeline for analyzing high-throughput genomic sequencing data. It provides validated and scalable workflows for variant calling, RNA-seq, small RNA analysis, and other assays, handling distributed execution, idempotent restarts, and transactional processing steps. The project enables researchers to focus on biological interpretation by automating the computational data processing component.
Bioinformaticians, genomics researchers, and computational biologists working with high-throughput sequencing data who need reproducible, validated, and scalable analysis pipelines.
Developers choose bcbio-nextgen for its community-driven development, automated validation ensuring call correctness, and scalable distributed execution that simplifies running complex genomic analyses across various computing environments.
Overview
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Use Cases
Best For
- Performing validated variant calling on whole-genome or exome sequencing data
Related Projects
Found a gem we're missing?
Open-Awesome is built by the community, for the community. Submit a project, suggest an awesome list, or help improve the catalog on GitHub.
