Single Cell Genomics
4 projects
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totalVIPython
A Python library for deep probabilistic modeling and analysis of single-cell and spatial omics data.
#scrna-seq#probabilistic-modeling#scverse
Stars1.6k
Forks466
Last commit1 day ago
SquidpyPython
A scalable Python toolkit for analyzing and visualizing spatial molecular data from tissue sections.
#image-analysis#single-cell-analysis#single-cell-rna-seq
Stars580
Forks116
Last commit1 day ago
scIB (Single-cell Integration Benchmarks)Python
A Python package for benchmarking and evaluating single-cell genomics data integration methods.
#batch-correction#data-integration#single-cell-genomics
Stars423
Forks76
Last commit2 months ago
MultigratePython
A Python library for integrating multiomic single-cell data using product-of-experts variational autoencoders.
#multiomic-integration#python-library#variational-autoencoder
Stars34
Forks8
Last commit1 day ago
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