Scanpy
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SquidpyPython
A scalable Python toolkit for analyzing and visualizing spatial molecular data from tissue sections.
#image-analysis#single-cell-analysis#single-cell-rna-seq
Stars580
Forks116
Last commit17 hours ago
scIB (Single-cell Integration Benchmarks)Python
A Python package for benchmarking and evaluating single-cell genomics data integration methods.
#batch-correction#data-integration#single-cell-genomics
Stars423
Forks76
Last commit2 months ago
FlashDeconvPython
A fast spatial deconvolution tool for transcriptomics data that scales to million-spot datasets while preserving rare cell type signals.
#python-library#single-cell-analysis#cell-type-deconvolution
Stars19
Forks0
Last commit
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