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InVesaliusPython
Open-source software for 3D medical imaging reconstruction from CT and MRI DICOM files.
#ct-scan#tomographic-images#3d-reconstruction
Stars796
Forks435
Last commit1 day ago
PathMLPython
An open-source toolkit for scalable, standardized computational pathology analysis, enabling AI and machine learning on large imaging datasets.
#image-analysis#microscopy#whole-slide-image
Stars459
Forks87
Last commit1 day ago
UsiigaciJupyter Notebook
A semi-automated pipeline for instance-aware cell segmentation, tracking, and migration analysis in phase contrast microscopy using Mask R-CNN.
#biomedical-research#bioimage-analysis#resnet-101
Stars205
Forks70
Last commit5 years ago
RS-FISHJava
An open-source tool for precise, interactive, fast, and scalable spot detection in 2D/3D microscopy images for FISH-based spatial genomics.
#bioimage-analysis#genomics#fish-spot-detection
Stars53
Forks15
Last commit1 year ago
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