Gene Regulatory Networks
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scGPTJupyter Notebook
A transformer-based foundation model pretrained on millions of single-cell profiles for generative AI tasks in single-cell multi-omics.
#reference-mapping#transformer-model#single-cell-analysis
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SCENICHTML
An R package to infer gene regulatory networks and identify cell types from single-cell RNA-seq data.
#r-package#bioconductor#single-cell-rna-seq
Stars485
Forks99
Last commit2 years ago
GeneCompassJupyter Notebook
A knowledge-informed cross-species foundation model pre-trained on over 120 million human and mouse single-cell transcriptomes to decipher universal gene regulatory mechanisms.
#cell-type-annotation#cross-species-analysis#deep-learning
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