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DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
A large transformer foundation model for single-cell RNA sequencing data analysis, including gene network inference, denoising, and cell annotation.
A Python package and tutorial collection for signal processing and machine learning, built on NumPy and SciPy.
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