Cell Embedding

scGPTJupyter Notebook

A transformer-based foundation model pretrained on millions of single-cell profiles for generative AI tasks in single-cell multi-omics.

scFoundationJupyter Notebook

A 100M-parameter foundation model for single-cell transcriptomics, enabling gene expression enhancement, drug response prediction, and perturbation analysis.

UCEPython

A zero-shot foundation model for generating universal embeddings from single-cell gene expression data.

scPRINTJupyter Notebook

A large transformer foundation model for single-cell RNA sequencing data analysis, including gene network inference, denoising, and cell annotation.