Biomedical Research

GeneGPTPython

A tool-augmented LLM that uses NCBI Web APIs to answer biomedical questions with high accuracy and reduced hallucinations.

CellVit++Python

A vision transformer-based deep learning model for automated instance segmentation and classification of cell nuclei in histopathology images.

UsiigaciJupyter Notebook

A semi-automated pipeline for instance-aware cell segmentation, tracking, and migration analysis in phase contrast microscopy using Mask R-CNN.

Awesome Drug Synergy, Interaction and Polypharmacy Prediction

A curated collection of resources and survey paper on relational deep learning methods for drug pair scoring tasks.

dgidbRuby

A Ruby on Rails web application for querying and exploring drug-gene interaction data from The Genome Institute's database.

TypeDB OSI - Biomedical Knowledge GraphPython

An open-source biomedical knowledge graph for drug discovery, precision medicine, and drug repurposing research.

FAIRshareVue

A cross-platform desktop application for curating and sharing biomedical research data and software according to FAIR guidelines.

max-nucleus-segmenterJupyter Notebook

A deep learning model that identifies and segments nuclei in microscopy images using Mask R-CNN.