Biomedical Data

PrimeKGJupyter Notebook

A biomedical knowledge graph integrating 20 resources to describe 17,080 diseases with over 4 million relationships across ten biological scales.

CellTypistPython

An automated cell type annotation tool for single-cell RNA-seq data using logistic regression classifiers.

Biomedical Information Extraction

A curated list of resources for Biomedical Information Extraction (BioIE), including datasets, tools, libraries, and research.

Hetionet: an integrative network of diseaseHTML

An integrative hetnet (heterogeneous network) encoding biomedical knowledge for drug repurposing and discovery.

PycytominerPython

A Python package for processing and normalizing high-dimensional morphological feature data from high-throughput cell imaging experiments.

LSTM for Kaggle EEG Detection competition (Torch Code)Lua

Trains LSTM and CNN models for EEG-based grasp-and-lift detection using Kaggle competition data.