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Biological Imaging

6 projects

Showing 6 of 6 projects

DeepCell
DeepCellPython

A deep learning library for single-cell analysis of biological images, specializing in cell segmentation and tracking.

#bioimage-analysis#instance-segmentation#python-library
Stars476
Forks108
Last commit1 month ago
CellProfiler Analyst
CellProfiler AnalystPython

Interactive exploration and analysis software for large, high-dimensional image-derived biological data with supervised machine learning.

#desktop-application#image-analysis#supervised-machine-learning
Stars170
Forks75
Last commit1 year ago
RootPainter
RootPainterPython

A GUI-based tool for training deep neural networks to segment biological images using corrective annotation.

#corrective-annotation#gui-application#deep-learning
Stars81
Forks26
Last commit21 days ago
nat: NeuroAnatomy Toolbox
nat: NeuroAnatomy ToolboxR

An R package for 3D visualization and analysis of biological image data, especially single neuron tracings.

#scientific-visualization#image-analysis#neuroscience
Stars77
Forks27
Last commit1 month ago
Flika
FlikaPython

An interactive image processing program for biologists written in Python.

#astrocytes#neurons#scientific-computing
Stars26
Forks2
Last commit4 months ago
Fungal Feature Tracker (FFT)
Fungal Feature Tracker (FFT)HTML

A user-friendly tool for automated quantitative characterization of filamentous fungi morphology and growth from basic images.

#spore-analysis#image-analysis#mycelium-growth
Stars13
Forks3
Last commit4 years ago

Related Tags

#Image Analysis3
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