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Bioimage Informatics

5 projects

Showing 5 of 5 projects

StarDist
StarDistPython

A Python library for 2D/3D object detection and instance segmentation in microscopy images using star-convex shapes.

#bioimage-analysis#instance-segmentation#python-library
Stars1.3k
Forks283
Last commit7 months ago
CONCH
CONCHPython

A vision-language foundation model for computational pathology, pretrained on 1.17M histopathology image-caption pairs for diverse AI tasks.

#biomedical-nlp#bioimage-analysis#vision-language-pathology
Stars534
Forks55
Last commit1 year ago
BoneJ
BoneJJava

A collection of Fiji/ImageJ plugins for trabecular geometry and whole bone shape analysis in skeletal biology.

#scientific-computing#image-analysis#trabecular-geometry
Stars30
Forks12
Last commit23 days ago
YeaZ
YeaZPython

A graphical interface for segmenting yeast cells in microscopy images using convolutional neural networks.

#yeast-cell-segmentation#deep-learning#cell-tracking
Stars29
Forks12
Last commit8 months ago
MIA
MIAJava

A modular ImageJ/Fiji plugin for assembling image and object analysis workflows with batch processing capabilities.

#image-analysis#batch-processing#modular
Stars17
Forks3
Last commit12 days ago

Related Tags

#Image Processing3
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